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NCIP Hub

Standards Portal CDEs Common Data Fields

This DataView is for the Common Data Fields of the Standards Portal CDEsUse this DataView to browse, search, explore and download the essential set of columns for NCI common data elements standards at the Hub. These CDEs were brought to the Hub for clarification, discussion and discovery. They were …
  • Resource Downloads
NCIP Hub

Standards Portal CDEs Complete View

This DataView on this resource page is used to explore the Standards Portal CDEsUse the DataView provided on this resource page to navigate, browse, search, explore and download the complete set of columns for NCI common data elements standards at the Hub. These CDEs are brought to the Hub for clari…
  • Resource Teaching Materials
NCIP Hub

caCDE-QA: A quality assurance platform for cancer study common data elements

This is a presentation about an overview of a NCI ITCR U01 project - caCDE-QA: A quality assurance platform for cancer study common data elements (PI, Guoqian Jiang, Mayo Clinic). The goal of the project is to design, develop and evaluate an integrative platform known as caCDE-QA that implements a s…
  • Resource Presentations
NCIP Hub

A Semantic Web-based Quality Assurance Tool for Cancer Study Common Data Elements

A poster presentation from the caCDE-QA project (PI: Jiang)  A poster presentation from the caCDE-QA project (PI: Jiang) …
  • Resource Presentations
NCIP Hub

Standards Portal Vocabulary DataView

The DataView for terminology referenced/used by the CDEs and CRFs currently contained in the Standards PortalThe DataView on this resource page can be used to browse, search, explore and download the NCI concepts for vocabulary referenced by the CDEs and CRFs uploaded to the Standards Portal. Collec…
  • Resource Teaching Materials
NCIP Hub

TCGA Common Data Elements

TCGA Common Data ElementsTCGA version 2.6 CDEs are the standard elements that were used in validation of clinical data in the TCGA 2.6 data files. The data files are available for download at the Data Matrix. This resource page at the NCIP HUB presents the CDEs for easy search and discovery. Materi…
  • Resource Teaching Materials

Debug Console

Close8 MBRequestSessionTimelineDatabase36Events15
$_GET
Array( terms => *, tags => commondataelements ) Array(
terms => *,
tags => commondataelements
)
$_POST
Array( ) Array(

)
$_COOKIE
Array( ) Array(

)
$_SERVER
Array( NOMAD_ALLOC_NAME => hubzero-cms.hubzero-cms[0], NOMAD_IP_hubzero_cms_nginx_hubzero_cms... Array(
NOMAD_ALLOC_NAME => hubzero-cms.hubzero-cms[0],
NOMAD_IP_hubzero_cms_nginx_hubzero_cms_ssl => 10.65.240.170,
NOMAD_CPU_LIMIT => 100,
HOSTNAME => c606ebc907e4,
SHLVL => 1,
HOME => /home/www-data,
NOMAD_ALLOC_ID => 65cbe3e7-d18e-41a6-2660-5905c6cc38a8,
NOMAD_MEMORY_LIMIT => 300,
NOMAD_ALLOC_INDEX => 0,
NOMAD_ADDR_hubzero_cms_nginx_hubzero_cms => 10.65.240.170:22375,
NOMAD_JOB_NAME => hubzero-cms,
NOMAD_ALLOC_DIR => /alloc,
NOMAD_PORT_hubzero_cms_nginx_hubzero_cms => 22375,
NOMAD_DC => aws-us-east-1,
NOMAD_ADDR_hubzero_cms_nginx_hubzero_cms_ssl => 10.65.240.170:23919,
NOMAD_PORT_hubzero_cms_nginx_hubzero_cms_ssl => 23919,
NOMAD_REGION => global,
PATH => /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin,
NOMAD_TASK_NAME => hubzero-cms-php,
NOMAD_SECRETS_DIR => /secrets,
PWD => /var/www/html,
NOMAD_GROUP_NAME => hubzero-cms,
NOMAD_TASK_DIR => /local,
NOMAD_IP_hubzero_cms_nginx_hubzero_cms => 10.65.240.170,
USER => www-data,
HTTP_X_REAL_IP => 18.233.111.242,
HTTP_X_FORWARDED_PROTO => https,
HTTP_X_FORWARDED_PORT => 443,
HTTP_X_FORWARDED_HOST => onescienceplace.org,
HTTP_X_FORWARDED_FOR => 18.233.111.242,
HTTP_FORWARDED => for=18.233.111.242; proto=https; by=172.17.0.7; httpproto=http/1.1; tlsver=tls12; tlscipher=0xc02f,
HTTP_ACCEPT_LANGUAGE => en-US,en;q=0.5,
HTTP_ACCEPT_ENCODING => br,gzip,
HTTP_ACCEPT => text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8,
HTTP_USER_AGENT => CCBot/2.0 (https://commoncrawl.org/faq/),
HTTP_HOST => onescienceplace.org,
REDIRECT_STATUS => 200,
SERVER_PORT => 443,
SERVER_ADDR => 172.17.0.3,
REMOTE_PORT => 58034,
REMOTE_ADDR => 172.17.0.1,
SERVER_SOFTWARE => nginx/1.15.7,
GATEWAY_INTERFACE => CGI/1.1,
HTTPS => on,
REQUEST_SCHEME => https,
SERVER_PROTOCOL => HTTP/1.1,
DOCUMENT_ROOT => /srv/http/_default,
DOCUMENT_URI => /search/,
REQUEST_URI => /search/?terms=*&tags=commondataelements,
SCRIPT_NAME => /search/,
CONTENT_LENGTH => ,
CONTENT_TYPE => ,
REQUEST_METHOD => GET,
QUERY_STRING => terms=*&tags=commondataelements,
SERVER_NAME => ~(?<spoke>^[^\.]*)(\.|)(onescienceplace.org),
SCRIPT_FILENAME => /srv/http/_default/core/index.php,
FCGI_ROLE => RESPONDER,
PHP_SELF => /search/,
REQUEST_TIME_FLOAT => 1597325891.72,
REQUEST_TIME => 1597325891,
argv => Array(
0 => terms=*&tags=commondataelements
)
,
argc => 1
)
session.client.forwarded 18.233.111.242
separator .
orderBy id
orderDir asc
1 registerIP
2 access
always
renew
tracker.sid ce2c5aea80fb224d1265a8361afbebbc
tracker.ssid ce2c5aea80fb224d1265a8361afbebbc
tracker.rsid ce2c5aea80fb224d1265a8361afbebbc
session.token 198b372b69f758a7c65af6e09ffd63e7
  • site 0.142 seconds (+0.142); 2.00 MB (+2.000) - afterInitialise
  • site 0.404 seconds (+0.262); 2.00 MB (0.000) - afterRoute
  • site 0.808 seconds (+0.404); 6.00 MB (+4.000) - afterDispatch
  • site 0.861 seconds (+0.053); 6.00 MB (0.000) - beforeRenderModule mod_googleanalytics (Google Analytics)
  • site 0.875 seconds (+0.015); 6.00 MB (0.000) - afterRenderModule mod_googleanalytics (Google Analytics)
  • site 0.879 seconds (+0.003); 6.00 MB (0.000) - beforeRenderModule mod_reportproblems (Trouble Report)
  • site 0.921 seconds (+0.042); 6.00 MB (0.000) - afterRenderModule mod_reportproblems (Trouble Report)
  • site 0.923 seconds (+0.002); 8.00 MB (+2.000) - onAfterRender
  • site 0.925 seconds (+0.003); 8.00 MB (0.000) - sessionStore
8 MB

36 Queries Logged: 0.019110202789307 seconds

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  2. DELETE
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  3. SELECT data
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  4. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_languages'
  5. SELECT session_id
      FROM `jos_session`
      WHERE `session_id` = 'ce2c5aea80fb224d1265a8361afbebbc'
      LIMIT 1
  6. INSERT INTO `jos_session` (`session_id`,`client_id`,`time`,`ip`)
      VALUES ('ce2c5aea80fb224d1265a8361afbebbc','0','1597325891','172.17.0.1')
  7. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_members'
  8. SELECT b.id
      FROM `jos_usergroups` AS `a`
      LEFT JOIN jos_usergroups AS b
      ON b.lft <= a.lft
      AND b.rgt >= a.rgt
      WHERE `a`.`id` = '1'
  9. SELECT *
      FROM `jos_viewlevels`
  10. SELECT folder AS type,element AS name,protected,params
      FROM `jos_extensions`
      WHERE `enabled` >= '1'
      AND `type` = 'plugin'
      AND `state` >= '0'
      AND `access` IN ('1','1','4')
      ORDER BY `ordering` ASC
  11. SELECT m.id,m.menutype,m.title,m.alias,m.note,m.path AS route,m.link,m.type,m.level,m.language,m.browserNav,m.access,m.params,m.home,m.img,m.template_style_id,m.component_id,m.parent_id,e.element AS component
      FROM `jos_menu` AS `m`
      LEFT JOIN jos_extensions AS e
      ON e.extension_id = m.component_id
      WHERE `m`.`published` = '1'
      AND `m`.`parent_id` > '0'
      AND `m`.`client_id` = '0'
      ORDER BY `m`.`lft` ASC
  12. SELECT con.`id`, cat.`alias`, cat.`path`
      FROM `jos_content` AS con
      LEFT JOIN `jos_categories` AS cat
      ON con.catid = cat.id
      WHERE con.state=1
      AND con.`alias` = 'search'
  13. SELECT *
      FROM `jos_redirect_links`
      WHERE `published`=1
      AND (`old_url`='https://onescienceplace.org/search/?terms=%2A&tags=commondataelements' OR `old_url`='/search/?terms=%2A&tags=commondataelements')
      LIMIT 1
  14. SELECT jos_template_styles.id,jos_template_styles.home,jos_template_styles.template,jos_template_styles.params,jos_extensions.protected
      FROM `jos_template_styles`
      INNER JOIN jos_extensions
      ON jos_extensions.element = jos_template_styles.template
      WHERE `jos_template_styles`.`client_id` = '0'
      AND `jos_extensions`.`enabled` = '1'
      AND `jos_extensions`.`type` = 'template'
      AND jos_extensions.`client_id` = `jos_template_styles`.`client_id`
      ORDER BY `home` DESC
  15. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_search'
  16. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_resources'
  17. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_tags'
  18. SELECT *
      FROM `jos_solr_search_facets`
      WHERE `jos_solr_search_facets`.`state` = '1'
  19. SELECT *
      FROM `jos_solr_search_facets`
      WHERE `jos_solr_search_facets`.`id` IN ('0')
  20. SELECT *
      FROM `jos_solr_search_searchcomponents`
      WHERE `jos_solr_search_searchcomponents`.`state` = '1'
  21. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_blog'
  22. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_groups'
  23. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_courses'
  24. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_projects'
  25. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_publications'
  26. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_tools'
  27. SELECT a.rules
      FROM `jos_assets` AS `a`
      WHERE `a`.`id` = '1'
      GROUP BY a.id, a.rules, a.lft
  28. SELECT *
      FROM `jos_assets`
      WHERE `jos_assets`.`parent_id` = '0'
  29. SELECT b.rules
      FROM `jos_assets` AS `a`
      LEFT JOIN jos_assets AS b
      ON b.lft <= a.lft
      AND b.rgt >= a.rgt
      WHERE `a`.`id` = '1'
      GROUP BY b.id, b.rules, b.lft
      ORDER BY `b`.`lft` ASC
  30. SELECT m.id,m.title,m.module,m.position,m.content,m.showtitle,m.params,mm.menuid,e.protected
      FROM `jos_modules` AS `m`
      LEFT JOIN jos_modules_menu AS mm
      ON mm.moduleid = m.id
      LEFT JOIN jos_extensions AS e
      ON e.element = m.module
      AND e.client_id = m.client_id
      WHERE `m`.`published` = '1'
      AND `e`.`enabled` = '1'
      AND (`m`.`publish_up` IS NULL OR `m`.`publish_up` <= '2020-08-13 13:38:12' )
      AND (`m`.`publish_down` IS NULL OR `m`.`publish_down` >= '2020-08-13 13:38:12' )
      AND `m`.`access` IN ('1','1','4')
      AND `m`.`client_id` = '0'
      AND (`mm`.`menuid` = '0' OR `mm`.`menuid` <= '0' )
      ORDER BY `m`.`position` ASC,`m`.`ordering` ASC
  31. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_support'
  32. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_media'
  33. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_kb'
  34. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_answers'
  35. SELECT extension_id AS id,element AS "option",params,enabled
      FROM `jos_extensions`
      WHERE `type` = 'component'
      AND `element` = 'com_wishlist'
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      SET `data` = '__default|a:11:{s:15:\"session.counter\";i:1;s:19:\"session.timer.start\";i:1597325891;s:18:\"session.timer.last\";i:1597325891;s:17:\"session.timer.now\";i:1597325891;s:24:\"session.client.forwarded\";s:14:\"18.233.111.242\";s:8:\"registry\";O:23:\"Hubzero\\Config\\Registry\":2:{s:7:\"\0*\0data\";O:8:\"stdClass\":1:{s:1:\"0\";s:7:\"session\";}s:9:\"separator\";s:1:\".\";}s:4:\"user\";C:17:\"Hubzero\\User\\User\":22:{a:1:{s:5:\"guest\";b:1;}}s:11:\"tracker.sid\";s:32:\"ce2c5aea80fb224d1265a8361afbebbc\";s:12:\"tracker.ssid\";s:32:\"ce2c5aea80fb224d1265a8361afbebbc\";s:12:\"tracker.rsid\";s:32:\"ce2c5aea80fb224d1265a8361afbebbc\";s:13:\"session.token\";s:32:\"198b372b69f758a7c65af6e09ffd63e7\";}',`time` = '1597325892',`ip` = '172.17.0.1'
      WHERE `session_id` = 'ce2c5aea80fb224d1265a8361afbebbc'
  • onAfterInitialise Method plgSystemP3p::onAfterInitialise /core/plugins/system/p3p/p3p.php:45
  • onAfterInitialise Method plgSystemRemember::onAfterInitialise /core/plugins/system/remember/remember.php:44
  • onAfterInitialise Method plgSystemHubzero::onAfterInitialise /core/plugins/system/hubzero/hubzero.php:46
  • onAfterInitialise Method plgSystemXFeed::onAfterInitialise /core/plugins/system/xfeed/xfeed.php:46
  • onAfterInitialise Method plgSystemReferrerpolicy::onAfterInitialise /core/plugins/system/referrerpolicy/referrerpolicy.php:21
  • onAfterRoute Method plgSystemJquery::onAfterRoute /core/plugins/system/jquery/jquery.php:46
  • onAfterRoute Method plgSystemSpamjail::onAfterRoute /core/plugins/system/spamjail/spamjail.php:46
  • onAfterRoute Method plgSystemIncomplete::onAfterRoute /core/plugins/system/incomplete/incomplete.php:46
  • onAfterRoute Method plgSystemUnapproved::onAfterRoute /core/plugins/system/unapproved/unapproved.php:46
  • onAfterRoute Method plgSystemPassword::onAfterRoute /core/plugins/system/password/password.php:46
  • onGetMultiEntry Method plgHubzeroAutocompleter::onGetMultiEntry /core/plugins/hubzero/autocompleter/autocompleter.php:164
  • onAfterDispatch Method plgSystemMobile::onAfterDispatch /core/plugins/system/mobile/mobile.php:47
  • onAfterDispatch Method plgSystemDebug::onAfterDispatch /core/plugins/system/debug/debug.php:85
  • onDisplay Method plgCaptchaRecaptcha::onDisplay /core/plugins/captcha/recaptcha/recaptcha.php:98
  • onAfterRender Method plgSystemSef::onAfterRender /core/plugins/system/sef/sef.php:45