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QUBES

Draft Version: Energy Balance Models

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/863This module introduces the student to the process of mathematical modeling. It shows how the process starts in the 4 real world ! with a physical system and some observations or an e…
  • Resource Teaching & Reference Material
QUBES

Exploring the Lotka-Volterra Competition Model using Two Species of Parasitoid Wasps

This resource has been updated - find the current version here: https://qubeshub.org/publications/270Laboratory exercise in which students collect data on parasitoid wasps and fit Lotka-Volterra competition models. The authors' abstract:"In this investigation, students first design experiments t…
  • Resource Teaching & Reference Material
QUBES

Drivers of Avian Local Species Richness: Continental-Scale Gradients, Regional Landscape, or Local Land Cover?

This resource has been updated - find the current version here: https://qubeshub.org/publications/269An ecology laboratory focusing upon the concept of species richness and its study.From the module: Students learn how to test hypotheses related to the local, regional, and continental determinants o…
  • Resource Teaching & Reference Material
QUBES

Carbon Footprint: A Study of Unit and Dimensions

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/866In this module, we integrate the context of carbon emission and human consumption into an introductory lesson on units and estimation. Background information is provided to familiarize…
  • Resource Teaching & Reference Material
QUBES

Taking a Second Look: Investigating Biology with Visual Datasets

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/831An article exploring the use of visual datasets as an educational aid for biology students. Article abstract: Have you considered the use of biological images as populations to be samp…
  • Resource Teaching & Reference Material
QUBES

XPPAUT

From Bard Ermentrout (2007), Scholarpedia, 2(1):1399:XPPAUT is a general numerical tool for simulating, animating, and analyzing dynamical systems. These can range fromdiscrete finite state models (e.g., McCulloch-Pitts neurons) tostochastic Markov models, todiscretization of partial differential eq… Launch Tool
  • Resource Software (On-site)
QUBES

Mathematics for Biologists Problem Workbook

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/748This is a workbook of solved problems created by Dr. Juergen Gerlach at Radford University, for students in Math 119 - Mathematics for Biologists. He is seeking guidance, suggestions, …
  • Resource Teaching & Reference Material
QUBES

AIM-UP! GIS and bats lesson

This resource has been updated - find the current version here: https://qubeshub.org/publications/335This lesson introduces the use of GIS (geographic information systems) in the study of biological questions, using bats as the model organism. This activity requires access to GIS software.  This res…
  • Resource Teaching & Reference Material
QUBES

AIM-UP! Reading scientific literature module

This resource has been updated - find the current version here: https://qubeshub.org/publications/336Designed to span 4 one-hour lectures, this module focuses upon developing the skill of thorough and critical reading of scientific literature.  This resource has been updated - find the current versi…
  • Resource Teaching & Reference Material
QUBES

An introduction to agent-based modeling.

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/849This is a textbook at an introductory level suitable for undergraduates, provided by Marco Janssen. From the book's Preface: This textbook is based on a collection of lecture notes…
  • Resource Teaching & Reference Material
QUBES

The Tree of Life

… following table as a guide.In addition, please tag the learning outcome(s) your item addresses, and add a tag for the theme.EXAMPLE: If you are posting a tool that addresses learning outcomes 2 & 3 under the theme of “Mechanisms” you would include the following tags: Tools, LO1.2, LO1.3, Mechanisms*Please use this format when tagging as it will make the collection easier to search.Want to contribute? Use these links to contribute to each of the main content themes:MechanismsSpeciationBiodiversityAcknowledgements:Many thanks to Tony Weisstein for his contributions to the learning objectives, an…
  • Resource Teaching & Reference Material
QUBES

An Introduction to Statistical Learning: with Applications in R

This resource has been updated - find the current version here:https://qubeshub.org/qubesresources/publications/847From the book website:This book provides an introduction to statistical learning methods. It is aimed for upper level undergraduate students, masters students and Ph.D. students in the …
  • Resource Teaching & Reference Material
QUBES

The ODD protocol: A review and first update

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/865The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs). The prima…
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QUBES

Quantitative reasoning: Interdisciplinary STEM 21st century reasoning modality

This resource has been updated - find the current version here: https://qubeshub.org/publications/316Date & Time:Wednesday, June 17 @ 9AMDescription:The Next Generation Science Standards (NGSS 2013) and the Common Core State Standards for Mathematics (NGA 2010) call for improving scientific, enginee…
  • Resource Teaching & Reference Material
QUBES

Survivorship in the Natural World

This resource has been updated - find the current version here: https://qubeshub.org/publications/273Data used in this activity are derived from: Bronikowski A.M., Altmann J., Brockman D.K., Cords, M., Fedigan, L.M., Pusey, A., Stoinski, T., Morris, W.F., Strier, K.B., Alberts, S.C. (2011) Data from…
  • Resource Teaching & Reference Material
QUBES

Robot vs. Disease: Using CellProfiler to model biomedical research in your classroom

This resource has been updated - find the current version here: https://qubeshub.org/publications/315Date & Time:Saturday, June 13 @ 2PM & Sunday June 14, @2PMDescription: In this session, I will introduce the open-source and freely-available software package CellProfiler, designed to quantify cellu…
  • Resource Teaching & Reference Material
QUBES

Ka-me: Voronoi Image Analyzer 1.0

Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern. The analytical tools include a variety of graph theoretic and geometric… Launch Tool
  • Resource Software (On-site)
QUBES

Effects of Laptop Use on Student Learning

This resource has been updated - find the current version here: https://qubeshub.org/publications/312Verbal and graphical/quantitative data from two studies of how laptop use affects student learning. I show and discuss these slides at the start of each semester to explain my no-laptop classroom pol…
  • Resource Teaching & Reference Material
QUBES

Sting, Carry and Stock: How Corpse Availability Can Regulate De-Centralized Task Allocation in a Ponerine Ant Colony

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/844We develop a model to produce plausible patterns of task partitioning in the ponerine ant Ectatomma ruidum based on the availability of living prey and prey corpses. The model is based…
  • Resource Teaching & Reference Material
QUBES

Introduction to Mathematical Modeling in Biotechnology, Cell Biology, and Physiology

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/906DescriptionThe course is a mathematical and computational exploration of five diverse areas of biology: human locomotion, gene sequence analysis, signal transduction pathways involved …
  • Resource Teaching & Reference Material

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