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NCIP Hub

Regulatory Challenges and Opportunities for Digital Pathology

FDA has cleared or approved a number of digital pathology devices for different intended uses, such as digital read and image analysis of immunohistochemically stained tissue slides, classification and enumeration of peripheral blood cells, and initial screening of cervical cytology slides. FDA has …
  • Resource Presentations
NCIP Hub

Pump data

PROJECT HOME PUMP(round robin2) FDALinkComputational Round Robin #2 was an international effort to assess the state of the art in biomedical computational fluid dynamics. The subject of Interlaboratory Study 2 is a simplified centrifugal blood pump. We built acrylic versions of these pumps, and per…
  • Resource Publications
NCIP Hub

NanoInformatics Knowledge Commons US-EU Data Integration Team: A Collaborative Approach to Building Rich Datasets

Nano WG Presentation February 8, 2018CEINT, NanoFase, CEREGE: Creating interoperability through data curation Nano WG Presentation February 8, 2018CEINT, NanoFase, CEREGE: Creating interoperability through data curation …
  • Resource Presentations
NCIP Hub

Emerging Issues Briefs

Each quarter, the New Hampshire Comprehensive Cancer Collaboration, in partnership with the Dartmouth-Hitchcock Norris Cotton Cancer Center, publishes an "Emerging Issues Brief." These briefs are intended to review a misunderstood, controversial, emerging, or otherwise "hot" topic in cancer. These b…
  • Resource Publications
NCIP Hub

Nano, - A Nature Research Solution

Nano.nature.com known as Nano is a non-journal type product under the Nature Research portfolio. It aims to provide highly indexed and structured information related to nanomaterials derived from peer-reviewed journals. These include composition, synthesis, properties, characterization methods and a…
  • Resource Presentations
NCIP Hub

The impact of engineered nanomaterials on aquatic species: ISA-TAB compatible dataset mined from literature (2007-2016)

Nano WG presentation, June 8, 2017Primary scope of the project was to: Model the toxicity of engineered nanomaterials (ENMs) at multiple levels and design and create a database (DB) containing extracted peer-reviewed published toxicity dataAnalyse the extracted data and identify the most significant…
  • Resource Presentations
NCIP Hub

Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

ITCR PI Monthly Meeting January 6, 2017Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and finally host a combined ra…
  • Resource Presentations
NCIP Hub

ASTM update: minimun ontology proposal

Nano WG Meeting December 1, 2016.• Review of interac+ons between ASTM and Nanoinforma+cs Roadmaps• Status of ASTM ‘minimum ontology’ proposal• Discussion of best means of iden+fying a “neutral, core, basic, minimum” ontology that is extendable to NPO, eNanoMapper, etc.• Likely to involve comparisons…
  • Resource Presentations
NCIP Hub

eNanoMapper Ontology

Nano WG December 7, 2016 presentation by Linda Rieswijk (Maastricht University).Additional relevant links not included in the presentation:Tools to convert e.g. excel files into the enanomapper RDF format here http://ambit.sourceforge.net/enanomapper/templates/convertor.htmlCollection of Turtle file…
  • Resource Presentations
  • Resource Presentations
NCIP Hub

NCI Alliance for Nanotechnology in Cancer, and caNanoLab: A Data Repository for Cancer Nanomedicines

Nano WG presentation November15, 2018 NCI Alliance for Nanotechnology in Cancer –Structure–Achievements–Scientific FocuscaNanoLab–Intro to Platform–Data Curation–User Statistics–Future Directions Nano WG presentation November15, 2018 NCI Alliance for Nanotechnology in Cancer –Structure–Achievements–…
  • Resource Presentations
NCIP Hub

Some thoughts on our progress in defining and advancing nanoinformatics

Nano WG presentation November 1, 2018 by Mark Hoover, NIOSHDiscussion on Nano WG accomplishments, goals and future directions. Nano WG presentation November 1, 2018 by Mark Hoover, NIOSH Discussion on Nano WG accomplishments, goals and future directions. …
  • Resource Presentations
NCIP Hub

NCIP Hub: Collaboration Tool for NCI Affiliated Programs and Investigators

NCIP Hub overview and CRCHD PACHE Hub demonstration. NCIP Hub overview and CRCHD PACHE Hub demonstration. …
  • Resource Presentations
Vhub

PyBetUnrest

PyBetUnrest implements the version of the probabilistic model BET (Bayesian Event Tree), called BET_UNREST, specifically developed to include the forecasting of non-magmatic unrest and related hazards, by adding a dedicated "non-magmatic" branch to the event tree's structure. Probabilities are c… Launch Tool
  • Resource Tools
Vhub

Timescales of mingling in shallow magmatic reservoirs

Arrival of magma from depth into shallow reservoirs has been documented as one of thepossible processes leading to eruption. Magma intruding and rising to the surface interacts with thealready emplaced, degassed magmas residing at shallower depths, leaving chemical signatures inthe erupted products.…
  • Resource Publications
Vhub

Sequential fragmentation/transport model applied to Irazu volcano, Costa Rica. Positive dispersion case

Sequential fragmentation/transport model was applied to ash deposits of 1723 eruption of Irazu volcano, Costa Rica. Some 25% of the sub-populations showed positive dispersion values, which were associated to a new fractal dimension,. With the help of Mandelbrot fractal relationship such cases were a…
  • Resource Publications
Vhub

VUELCO- Dominica Exercise Plan

Official Plan for the development of the Dominica simulation exercise - Roseau, 14th-15th May 2015 - within the activities of VUELCO project, WP 9, task 9.6 Official Plan for the development of the Dominica simulation exercise - Roseau, 14th-15th May 2015 - within the activities of VUELCO project, W…
  • Resource Miscellaneous
Vhub

Insights from Volcanic Unrest Simulation Exercises

Lecture given during the second VUELCO short-course, held in Dominica on 13th and 14th May 2015.  Lecture given during the second VUELCO short-course, held in Dominica on 13th and 14th May 2015.  …
  • Resource Presentations

Debug Console

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